Sage-N Research sells a turnkey proteomics computing platform called Sorcerer. They like to call Sorcerer an Integrated Data Appliance. Appliances such as a toaster are useful as soon as you plug them in. So it is with Sorcerer. Plug it in and you are running Sequest and Scaffold.
Sorcerer runs Sequest fast. Very fast. It can search 1000's of spectra per hour even with several PTMs.
Sorcerer runs Scaffold in a automated batch mode. The output of Sequest is piped through Scaffold for validation. The output of this pipeline can be further validated off-line with the free Scaffold Viewer.
Proteome Software and Sage-N Research share a common vision that tools for proteomics should be easy to use. Our products are designed to be used by research scientists without needing systems administrators, database administrators or bioinformaticians. We kept this vision in mind while collaborating to make Sorcerer run Scaffold in a seamless manner.
Sage-N Research distributes Scaffold as a part of Sorcerer.
For more information on Scaffold on Sorcerer, contact Sage-N Research.