• Improving Sensitivity by Combining Results from Multiple MS/MS

  Brian C. Searle and Mark Turner (Proteome Software)
  ABRF 2007 P17-M

• The Effect of Data Analysis Choices on the Number of Proteins Identified in MS/MS Proteomics Experiments

  Phillip A. Wilmarth (Oregon Health Sciences University), Brian C. Searle (Proteome Software)
  HUPO 2006 W013
  

• Improving Computer Interpretation of Linear Ion Trap Data Using Scaffold

  Brian C. Searle, Mark Turner (Proteome Software)
  HUPO 2006 W006
  

• Flexible, Integrated, and Robust LIMS Information Pipeline withs Results Analytics Views at Scripps Florida

  James P. DeGreef, Denis Bronnikov, Cam Barnard, Brian Searle, Bruce Pascal, Frank Worsley, Mark Turner, Mark Pitman, Sau-Mei Leung, Mike S. Lin
  (Genologics, Proteome Software, Scripps Research Institute - Florida)
  HUPO 2006 W Poster 009
  

• Identifying Peptides the Way Experets Do: A Scientist-Driven Scoring System for Improving MS/MS Peptide Identification Confidence

  Brian C. Searle, Mark Turner (Proteome Software)
  ABRF 2006 #003
  

• Improving Sensitivity by Combining Results from Multiple MS/MS Search Methologies with the Scaffold Computer Algorithm

  Brian C. Searle, James M. Brundege, Mark Turner (Proteome Software)
  HUPO 2005 WP299
  

• Use of Multiple Peptide Identification Programs to Increase Peptide and Protein Identifications in Human Whole Saliva

  Phillip A. Wilmarth, Brian C. Searle, D. Leif Rustvold, Michael A. Riviere, Larry L. David
  (Oregon Health & Science University, Proteome Software)
  ASMS 2005 WP377
  

• Scaffold: A Program to Probabilistically Combine Results from Multiple MS/MS Database Search Engines

  Brian C. Searle, James M. Brundege, Mark Turner (Proteome Software)
  ABRF 2005 P87-T
  

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