Extract more detailed and accurate information from your MS/MS data.

Discover how Scaffold Software helps you visually compare results across your entire experiment. These Flash demonstrations will show you how Scaffold lets you organize and share significant MS/MS data with clients and colleagues. You can also view a webinar.

Protein Display and Filtering

Scaffold Software lets you manage large quantities of MS/MS data in a program that's easy to learn and easy to use.

Flash demo (1.7MB)

Demo w/o sound (0.8MB)

Data Evaluation

Improve your confidence in protein identification by combining X!Tandem's results with SEQUEST or Mascot.

Flash demo (1.4MB)

Demo w/o sound (0.4MB)

In-Depth Analysis

Cross-validating scores from different search engines produces higher coverage and fewer false positives.

Flash demo (1.2MB)

Demo w/o sound (0.5MB)

Free Scaffold Software

Downloading the free Scaffold Viewer is a simple way for collaborators and colleagues to view and maintain their MS/MS results.

Flash demo (2.6MB)

Demo w/o sound (1.2MB)

Focus On Key Proteins

Scaffold will help you focus your validation efforts on the proteins that matter to you.