PTM Validation at a Glance: Scaffold PTM introduces several key features for confident phosphorylation site assignment...
Calculate site assignments with confidence for any type of PTM: Site specific PTM confidence is calculated based on Ascore, the standard in phosphorylation site assignment.
Compare modification rates from many samples.
Open standards and open data: Scaffold PTM embraces the open search engine standard mzIdentML by HUPO,
currently supported by Scaffold and Mascot.
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Scaffold PTM Price:
Scaffold PTM $7000 (commercial); $6000 (with academic discount)
$1,000 Discount for current owners of Scaffold
$2,000 Discount for current owners of ScaffoldBatch or ...
Both Scaffold and Scaffold Q+ or ...
Both Scaffold and MassQC Standalone
Download:
Download Scaffold PTM (Please note: Scaffold 3.0.8 is required for compatibility when exporting MZID/MGF files when loading into Scaffold PTM)
CONFIDENT PTM SITE ASSIGNMENT
Scaffold PTM has been augmented to work for all types of PTMs, including phosphorylation, oxidation and glycosolation.
Scaffold PTM lets you quickly compare site specific phosphorylation rates across many samples with clear charts that make instant figures for PowerPoint presentations and posters.
Scaffold PTM embraces the open search engine standard mzIdentML by HUPO, currently supported by Scaffold and Mascot, and endorsed by every major search engine vendor. SPTM files use an accessible open database format and we introduce the Scaffold PTM Console for instant access to all underlying data. Scaffold PTM contains a Free Viewer and supports Windows, Macintosh and Linux.
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