PTM Validation at a Glance: Scaffold PTM delivers confident phosphorylation site assignment

Site specific PTM confidence is calculated based on Ascore, the standard in phosphorylation site assignment.

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• Scaffold 3.3 >> Visualize and Validate Complex MS/MS Proteomics Experiments

 

• Scaffold Release Notes >> Check out new features and current bug fixes!

Scaffold has proven its performance in over 400 academic, public and private research facilities around the world with the ability to display a visual comparison of the proteins found by multiple search engines across all the samples of an experiment.

• Visualize >> compare multiple samples and categories with advanced statistical analysis.


• Validate >> Identify proteins by validating MS/MS data from multiple search engines.


• Collaborate >> Organize and share MS/MS experimental data with clients or colleagues.
  

  >> MassQC in the Press!

Are your LC-MS/MS experiments reproducible? Proteome Software released its standalone version of the LC-MS/MS Quality Control tool, MassQC, that helps you achieve more reproducible LC-MS/MS experiments. Monitor and troubleshoot the performance of your LC-MS/MS instrumentation to save valuable time resources.

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> Summer Newsletter

> Check out Scaffold 3.3.3

> MassQC Standalone 1.7

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MassQC improves reproducibility by examining repeated, standard runs for a small number of known proteins, and covers both width and breadth of your LC-MS system performance. Monitor and troubleshoot you LC-MS/MSinstrumentation. Evaluate MassQC today at here.

Try the quantitation module for Scaffold!

"By presenting reporter ions visually, Scaffold Q+ software allows scientists to more easily comprehend the complex data presented in multiple iTRAQ and TMT experiments."