Demo Data for Scaffold Elements
- Scaffold Elements Tutorial (PDF and RAW data
files available) - Demo file tutorial PDF
-
There are two ways to download the data needed to create the demos.
You can download the entire data set (about 4 GB) below: - One large ZIP file with all data (~4.2 GB)
- Or you can download smaller ZIP files for each demo:
- Demo 1 (~125 MB)
- Demo 2 (~775 MB)
- Demo 3 (~1 GB)
- Demo 4 (~2.3 GB)
Demo Data for Scaffold perSPECtives
- Scaffold perSPECtives - Data
- SFDB Files
- HUPO Serum Demo Data
- mzIdentML Files
- Coming Soon...
Demo Data for Scaffold
- Scaffold Tutorials (PDF files available)
- Module 1 - Load and Organize Data
- Module 2 - View and Filter Data
- Module 3 - Quantitation and Statistics
- Tutorial Data (ZIP files include data and FASTA files)
- Scaffold Tutorial 3 - Sequest
- Scaffold Tutorial 3 - Mascot
- Scaffold User Guide - Mascot
Demo Data for Scaffold Batch
- Scaffold Batch Getting Started Guide (PDF files available)
- Scaffold Batch Getting Started Guide
- Label-Free data and Uniprot FASTA database
Demo Data for Scaffold Q+ and Q+S
- Scaffold Q+/Q+S Tutorial
- Tutorial - Quantitation in Scaffold Q+/Q+S
- Scaffold Q+ - iTRAQ Data
- Mascot iTRAQ Demo Data
- FASTA File Needed for Mascot iTRAQ Demo Data
- Scaffold Q+S - SILAC Data
- SF3 Files
- Discoverer
- Mascot Distiller
- MaxQuant
- Search Result Files
- Thermo Discoverer Data
- Mascot Distiller Data
- MaxQuant Data
- FASTA File for SILAC Data
Demo Data for Scaffold PTM
- Scaffold PTM Tutorials (PDF files available)
- Tutorial - Introduction to PTM
- Scaffold PTM Tutorial Data (ZIP files available)
- PTM Tutorial Data
- Ultradeep Human Phosphoproteome Study
- Citation available here
-
SPTM File - PTM 3.0 protein normalized phospho quantitation*
*Raw data from the study was processed with MaxQuant 1.5, Scaffold 4.4.7 and PTM 3 to generate SPTM file above.
