Scaffold DIA is an identification and quantification program for data-independent acquisition proteomics and is designed to help researchers identify, organize, summarize, refine, quantitate, and visualize experiment results. Among other libraries and algorithms, it uses the open-source software tool, EncyclopeDIA, to perform its DIA analysis. This page includes information should you need to cite EncyclopeDIA.
Searle et al. 2018. Comprehensive peptide quantification for data independent acquisition mass spectrometry using chromatogram libraries.
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