Discovery-based MS/MS Software

  • perSPECtives overview
    Global view of complex experimental changes

  • Scaffold's GO terms
    Track gene ontology and cellular function

  • Search engine scatterplot
    Get better coverage and extra IDs

  • Kernel density function
    Track changes across sample groups

  • Advanced quantitative testing
    Determine up and down regulation

  • PTM analysis with Ascore
    Confident PTM localization

  • Attribute categorization
    Plan and organize your experiments

  • Detailed sequence coverage maps
    Dig deeper into your data

I can certainly see the utility of Scaffold for people who wish to compare results between different search engines. Good collection of info under the links section, by the way.

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