Discovery-based MS/MS Software
ProteomicsMetabolomics

  • perspectives overview

    Elements samples view
    Metabolomics MS search software Proteomics ∣ Metabolomics

  • perspectives overview

    Metabolites MS/MS view
    Confirm MS/MS spectral matches Proteomics ∣ Metabolomics

  • perspectives overview

    Elements heatmap
    Track experiment-wide changes at a glance Proteomics ∣ Metabolomics

  • perspectives overview

    perSPECtives overview
    Global view of complex experimental changes Proteomics ∣ Metabolomics

  • scaffold go terms

    Scaffold's GO terms
    Track gene ontology and cellular function Proteomics ∣ Metabolomics

  • search engine scatterplot

    Search engine scatterplot
    Improve confidence with multiple search engines Proteomics ∣ Metabolomics

  • kernel density function

    Kernel density function
    Track changes across sample groups Proteomics ∣ Metabolomics

  • ptm analysis with ascore

    Advanced quantitative testing
    Determine up and down regulation Proteomics ∣ Metabolomics

  • attribute categorization

    PTM analysis with Ascore
    Confident PTM localization Proteomics ∣ Metabolomics

  • detailed sequence coverage maps

    Detailed sequence coverage maps
    Dig deeper into your data Proteomics ∣ Metabolomics

Scaffold, along with its statistical evaluation, has given us a way to confidently filter our SEQUEST results. Definitely if you use SEQUEST we would recommend Scaffold to display and organize your results.

Andrew Guzzetta, IonSource

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