Discovery-based MS/MS Software

  • perspectives overview

    Elements samples view
    Metabolomics MS search software Proteomics ∣ Metabolomics

  • perspectives overview

    Metabolites MS/MS view
    Confirm MS/MS spectral matches Proteomics ∣ Metabolomics

  • perspectives overview

    Elements heatmap
    Track experiment-wide changes at a glance Proteomics ∣ Metabolomics

  • perspectives overview

    perSPECtives overview
    Global view of complex experimental changes Proteomics ∣ Metabolomics

  • scaffold go terms

    Scaffold's GO terms
    Track gene ontology and cellular function Proteomics ∣ Metabolomics

  • search engine scatterplot

    Search engine scatterplot
    Improve confidence with multiple search engines Proteomics ∣ Metabolomics

  • kernel density function

    Kernel density function
    Track changes across sample groups Proteomics ∣ Metabolomics

  • ptm analysis with ascore

    Advanced quantitative testing
    Determine up and down regulation Proteomics ∣ Metabolomics

  • attribute categorization

    PTM analysis with Ascore
    Confident PTM localization Proteomics ∣ Metabolomics

  • detailed sequence coverage maps

    Detailed sequence coverage maps
    Dig deeper into your data Proteomics ∣ Metabolomics

Scaffold has been a great investment for my facility. It ... allows clients that may not have a deep understanding of mass spectrometry ... to understand our results, [and] it has contributed greatly to ongoing research in the facility.

Brett Phinney, University of California, Davis


ProteoWizard Protein Metrics IMP IMBA UC Davis PacMass MS Bioworks Matrix Science Mass Solutions Agilent Technologies Sagen Research Software4Labs Cloud Scientific Proteomic Solutions Scinco