Discovery-based MS/MS Software
ProteomicsMetabolomics

  • perspectives overview

    Elements samples view
    Metabolomics MS search software Proteomics ∣ Metabolomics

  • perspectives overview

    Metabolites MS/MS view
    Confirm MS/MS spectral matches Proteomics ∣ Metabolomics

  • perspectives overview

    Elements heatmap
    Track experiment-wide changes at a glance Proteomics ∣ Metabolomics

  • perspectives overview

    perSPECtives overview
    Global view of complex experimental changes Proteomics ∣ Metabolomics

  • scaffold go terms

    Scaffold's GO terms
    Track gene ontology and cellular function Proteomics ∣ Metabolomics

  • search engine scatterplot

    Search engine scatterplot
    Improve confidence with multiple search engines Proteomics ∣ Metabolomics

  • kernel density function

    Kernel density function
    Track changes across sample groups Proteomics ∣ Metabolomics

  • ptm analysis with ascore

    Advanced quantitative testing
    Determine up and down regulation Proteomics ∣ Metabolomics

  • attribute categorization

    PTM analysis with Ascore
    Confident PTM localization Proteomics ∣ Metabolomics

  • detailed sequence coverage maps

    Detailed sequence coverage maps
    Dig deeper into your data Proteomics ∣ Metabolomics

As a core lab, one of our missions is to educate and empower end users: Scaffold is ideal for this purpose. Scaffold presents results in an intuitive ... format and the free Scaffold viewer enables researchers to view and analyze their own data.

Allis Chien, Stanford University

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