Discovery-based MS/MS Software

  • perSPECtives heat maps
    Global view of complex experimental changes

  • perSPECtives heat maps
    Track gene ontology and cellular function

  • perSPECtives heat maps
    Get better coverage and extra IDs

  • Kernel density function
    Track changes across sample groups

  • Advanced quantitative testing
    Determine up and down regulation

  • PTM analysis with Ascore
    Confident PTM localization

  • Attribute categorization
    Plan and organize your experiments

  • Detailed sequence coverage maps
    Dig deeper into your data

Scaffold, along with its statistical evaluation, has given us a way to confidently filter our SEQUEST results. Definitely if you use SEQUEST we would recommend Scaffold to display and organize your results.

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