Discovery-based MS/MS Software

  • perspectives overview

    Elements samples view
    Metabolomics MS search software Proteomics ∣ Metabolomics

  • perspectives overview

    Metabolites MS/MS view
    Confirm MS/MS spectral matches Proteomics ∣ Metabolomics

  • perspectives overview

    Elements heatmap
    Track experiment-wide changes at a glance Proteomics ∣ Metabolomics

  • perspectives overview

    perSPECtives overview
    Global view of complex experimental changes Proteomics ∣ Metabolomics

  • scaffold go terms

    Scaffold's GO terms
    Track gene ontology and cellular function Proteomics ∣ Metabolomics

  • search engine scatterplot

    Search engine scatterplot
    Improve confidence with multiple search engines Proteomics ∣ Metabolomics

  • kernel density function

    Kernel density function
    Track changes across sample groups Proteomics ∣ Metabolomics

  • ptm analysis with ascore

    Advanced quantitative testing
    Determine up and down regulation Proteomics ∣ Metabolomics

  • attribute categorization

    PTM analysis with Ascore
    Confident PTM localization Proteomics ∣ Metabolomics

  • detailed sequence coverage maps

    Detailed sequence coverage maps
    Dig deeper into your data Proteomics ∣ Metabolomics

Scaffold has proven invaluable in helping explain experimental results to our clients from large proteomics experiments. The visualization tools make it easy for our clients to understand complex MS/MS comparative analyses.

Dave Allen, Proteomic Research Services


Matrix Science Mass Solutions Agilent Technologies Sierra Analytics Sagen Research Software4Labs Cloud Scientific Proteomic Solutions