Discovery-based MS/MS Software

  • perSPECtives heat maps
    Global view of complex experimental changes

  • perSPECtives heat maps
    Track gene ontology and cellular function

  • perSPECtives heat maps
    Get better coverage and extra IDs

  • Kernel density function
    Track changes across sample groups

  • Advanced quantitative testing
    Determine up and down regulation

  • PTM analysis with Ascore
    Confident PTM localization

  • Attribute categorization
    Plan and organize your experiments

  • Detailed sequence coverage maps
    Dig deeper into your data

Scaffold has been a great investment for my facility. It ... allows clients that may not have a deep understanding of mass spectrometry ... to understand our results, [and] it has contributed greatly to ongoing research in the facility.

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