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Scaffold 4 released! New FDR filtering, GO Term comparison by category, more robust statistics and compatibility with MaxQuant label-free quantitation...

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Intuitive Proteomics Analysis

Protein Level Chart
Gene Ontology Annotations Pie Chart
Peptide Similarities
Protein Venn Diagram
Gene Ontology Bar Chart
Kernel Density Function
Proteins and GO Terms

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Our group produces large amounts of data that is difficult to control, catalogue and analyse. To carry out shotgun proteomics techniques we had to load the MS/MS data manually, which proved both labour intensive and error prone.

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