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Scaffold 4.3.4 is available. Download it now.
Check out Scaffold perSPECtives 2.0.5.
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Global view of complex experimental changes
Scaffold's GO terms
Track gene ontology and cellular function
Search engine scatterplot
Get better coverage and extra IDs
Kernel density function
Track changes across sample groups
Advanced quantitative testing
Determine up and down regulation
PTM analysis with Ascore
Confident PTM localization
Plan and organize your experiments
Detailed sequence coverage maps
Dig deeper into your data
I must say that I am impressed. I had a set of data to be analyzed for
publication and I obtained what I wanted out of Scaffold in just a few minutes.