Proteome Software Newsletter

Subscribe to our newsletter

  • Name
  • Email Address
  • See our privacy policy for how we use your information.

Newsletter Archive

  • Newsletter 11 - Summer 2014 : Volume 6, Issue 2
  • Come see us at ASMS this year. Sneak peak at our new metabolomics product, Elements, for Metabolomics. Scaffold perSPECtives has new features, including label free quantitation and an interactive heatmap.
  •  
  • Newsletter 10 - Spring 2014 : Volume 6, Issue 1
  • Come see us at ABRF, US HUPO and ASMS this year. Scaffold, Q+ and Q+S have been updated and released with many new features. Q+ and Q+S now support iTRAQ and TMT data from MaxQuant. Additionally, TMT 10-plex and 8-plex are supported as well as dimethyl quantitation from MaxQuant and Proteome Discoverer.
  •  
  • Newsletter 9 - Fall 2013 : Volume 5, Issue 3
  • Come see us at HUPO in Japan, booth #42. Plus, we launched a new product, perSPECtives, that allows flexible analysis and organization of large-scale proteomics experiments, with robust, iterative filtering to find proteins of interest. Adaptive differential expression coloring to make changes pop.
  •  
  • Newsletter 8 - Summer 2013 : Volume 5, Issue 2
  • Come see us at ASMS at booth #62. Plus, User's Group Meeting on Sunday, June 9th, 2013, 230pm. Our flagship product, Scaffold 4 is stable at 4.0.5. New FDR filtering, GO Term comparison by category, more robust statistics and compatibility with MaxQuant label-free quantitation.
  •  
  • Newsletter 7 - Spring 2013 : Volume 5, Issue 1
  • Our flagship product, Scaffold 4 has been released! New FDR filtering, GO Term comparison by category, more robust statistics and compatibility with MaxQuant label-free quantitation.
  •  
  • Newsletter 6 - Fall 2012 : Volume 4, Issue 2
  • How to queue structured directories for easily loading complex experiments that have multiple categories and biosamples; ASMS presentation describing non-parametric statistical methods used in Scaffold Q+ and Scaffold Q+S; User Group presentation about Scaffold PTM 2.0 features such as global motif analysis, quantification at modification sites and localization filtering; Proteome Software is distributing Mascot Distiller in the USA; Scaffold supports Spectrum Mill files; an early look at Scaffold 4.0; Scaffold Suite feature comparison table
  •  
  • Newsletter 5 - Spring 2012 : Volume 4, Issue 1
  • SILAC quantitation with Scaffold Q+S; enhanced statistics in Scaffold Q+; computer memory settings for improved speed; what are Progenesis LC-MS and HDExaminer?
  •  
  • Newsletter 4 - Fall 2011 : Volume 3, Issue 2
  • MassQC standalone; custom gene ontology annotations; Scaffold reads Proteome Discoverer MSF files; enhanced Scaffold Batch features; computer memory settings for improved speed; Scaffold PTM batch; we distribute Sierra Analytics HDExaminer
  •  
  • Newsletter 3 - Winter 2011 : Volume 3, Issue 1
  • MassQC standalone; grouping algorithm explained; configuring protein annotation preferences; label-free quantitation with Progenesis LC-MS; Scaffold Batch
  •  
  • Newsletter 2 - Winter 2010 : Volume 2, Issue 1
  • The what, why, how of MassQC! Learn about LC-MS quality control in the field of proteomics. System variability, instrument performance and more...
  •  
  • Newsletter 1 - Winter 2009 : Volume 1, Issue 1
  • Create reverse FASTA databases; MassQC is coming; journal article on the importance of correct peptides and proteins in complex mixtures; Scaffold Q+ is launched; downloading GOA database; Scaffold Batch