Proteome Software Newsletter
Newsletter Archive
- Newsletter 7 - Spring 2013
: Volume 5, Issue 1
- Our flagship product, Scaffold 4 has been released! New FDR filtering,
GO Term comparison by category, more robust statistics and
compatibility with MaxQuant label-free quantitation.
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- Newsletter 6 - Fall 2012
: Volume 4, Issue 2
- How to queue structured directories for easily loading
complex experiments that have multiple categories and biosamples;
ASMS presentation describing non-parametric statistical methods
used in Scaffold Q+ and Scaffold Q+S; User Group presentation
about Scaffold PTM 2.0 features such as global motif analysis,
quantification at modification sites and localization filtering;
Proteome Software is distributing Mascot Distiller in the USA;
Scaffold supports Spectrum Mill files; an early look at Scaffold 4.0;
Scaffold Suite feature comparison table
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- Newsletter 5 - Spring 2012
: Volume 4, Issue 1
- SILAC quantitation with Scaffold Q+S; enhanced statistics
in Scaffold Q+; computer memory settings for improved speed;
what are Progenesis LC-MS and HDExaminer?
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- Newsletter 4 - Fall 2011
: Volume 3, Issue 2
- MassQC standalone; custom gene ontology annotations;
Scaffold reads Proteome Discoverer MSF files; enhanced Scaffold
Batch features; computer memory settings for improved speed;
Scaffold PTM batch; we distribute Sierra Analytics HDExaminer
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- Newsletter 3 - Winter 2011
: Volume 3, Issue 1
- MassQC standalone; grouping algorithm explained;
configuring protein annotation preferences; label-free
quantitation with Progenesis LC-MS; Scaffold Batch
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- Newsletter 2 - Winter 2010
: Volume 2, Issue 1
- The what, why, how of Mass QC!
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- Newsletter 1 - Winter 2009
: Volume 1, Issue 1
- Create reverse FASTA databases; Mass QC is coming; journal
article on the importance of correct peptides and proteins in
complex mixtures; Scaffold Q+ is launched; downloading GOA database;
Scaffold Batch
