Why Choose Us?

Intuitive Interface

  • Easy for beginners and experts alike to examine raw data
  • Fluid and efficient movement between studying spectra, peptides, and proteins
  • Straightforward management of all proteins in every loaded sample

Load and Go

  • Meaningful charts and graphs instead of endless tables of names and values
  • Simple loading wizard to help prepare the best structure for data in queue
  • Seamless X! Tandem integration for vigorous refinement searches

Free Viewers

  • Control and share data freely between colleagues or other laboratories
  • View completed experiments with any of the programs in our Scaffold Software Suite
  • Open SF3 or SFD files in Scaffold Viewer and SPTM files in Scaffold PTM Viewer


  • Adjustable protein identification probability thresholds
  • Robust statistics and advanced algorithms for accurate quantification and analysis
  • Myriad options for data organization and optimal experimental design

We know proteomics

  • Support staff with over 30 years combined proteomics and bioinformatics experience
  • Frequent attendance and presence at the ABRF, ASMS, and HUPO conferences
  • Worldwide, multi-lingual communication with our customers