Scaffold PTM

Confident phosphorylation site assignment and PTM Validation at a glance.

Ascore and Modified Peptides
  • Calculate site assignments with confidence for PTMs.
  • Find trends with built-in motif hunting and visualization.
  • Harness Ascore: the standard in site assignment.
  • Compare modification rates between multiple samples.
  • Take advantage of mzIdentML open-standard format.
  • Import multiplexed quantitative Scaffold Q+ results.