Experiment-driven Labeled and Label-free Quantitative Analysis
Analyze iTRAQ/TMT data from Proteome Discoverer, Mascot, or PEAKS mzIdentML files or label-free/isobaric-labeled samples from Scaffold
Quantify differential expression and test for statistical significance
Normalize, roll-up, and interpret biological differences and find sources of technical variation at multiple levels
Scaffold Quant is our new Quantitative Platform. Check out Scaffold Q+S for the previous generation software
Download (current version: 5.0.3)
Managing a core facility or shared resource department? Need help with gaps in your software pipeline? Want to try new methods like DIA proteomics? Do you need a free and easy way to share results with your customers?
Need an elegant yet easy to use solution for data processing? Not sure where to begin when starting up a new lab. Let us help take the pressure off setting up a software pipeline so you can focus on the science.
Tutorials & Videos
Check out our YouTube channel for Scaffold tutorials, from getting started to advanced use. We have videos for all our Scaffold products, as well as videos from previous conferences and special events.