Proteome Software offers a variety of proteomics, metabolomics, and small molecule mass
spectrometry software solutions for handling large-scale, data-rich biological identification
or quantitative experiments. We innovate on the leading edge of MS/MS analytics, and our
software tools are used in hundreds of laboratories and universities around the world.
Please use the buttons above to browse our mass spectrometry software solutions.
Contact us for a free evaluation of any of our products,
or to learn more about our scientific software solutions.
You can set custom thresholds for your results in order to return optimal confidence,
including a range of simple and advanced filtering options.
In Scaffold, combine data from multiple search engines and search with
X! Tandem (bundled with Scaffold)
to broaden and refine your findings.
In proteomics, use Scaffold for graphical representations that include Venn diagrams,
mass spectra, protein sequences, and fragmentation tables that help you dial into important information.
In metabolomics, use Scaffold Elements
to validate identifications by examining matches to MS/MS spectra and expected isotopic distributions.
Scaffold includes color-coded and organized GO Term Annotations via any number of
GOA databases. You can also define
custom gene ontologies
and compare GO expression across sample categories with interactive pie and bar charts.