Leading Edge Analytics for Discovery-Based Mass Spectrometry

  • perspectives overview

    Elements samples view
    Metabolomics & Small Molecule MS search software Proteomics ∣ Metabolomics/Small Molecules

  • perspectives overview

    Metabolites MS/MS view
    Confirm MS/MS spectral matches Proteomics ∣ Metabolomics/Small Molecules

  • perspectives overview

    Elements heatmap
    Track experiment-wide changes at a glance Proteomics ∣ Metabolomics/Small Molecules

  • perspectives overview

    perSPECtives overview
    Global view of complex experimental changes Proteomics ∣ Metabolomics/Small Molecules

  • scaffold go terms

    Scaffold's GO terms
    Track gene ontology and cellular function Proteomics ∣ Metabolomics/Small Molecules

  • search engine scatterplot

    Search engine scatterplot
    Improve confidence with multiple search engines Proteomics ∣ Metabolomics/Small Molecules

  • kernel density function

    Kernel density function
    Track changes across sample groups Proteomics ∣ Metabolomics/Small Molecules

  • ptm analysis with ascore

    Advanced quantitative testing
    Determine up and down regulation Proteomics ∣ Metabolomics/Small Molecules

  • attribute categorization

    PTM analysis with Ascore
    Confident PTM localization Proteomics ∣ Metabolomics/Small Molecules

  • detailed sequence coverage maps

    Detailed sequence coverage maps
    Dig deeper into your data Proteomics ∣ Metabolomics/Small Molecules

Scaffold has been a great investment for my facility. It ... allows clients that may not have a deep understanding of mass spectrometry ... to understand our results, [and] it has contributed greatly to ongoing research in the facility.

Brett Phinney, University of California, Davis

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