Leading edge analytics for mass spectrometry

Welcome to the Scaffold Software community

We offer DDA and DIA proteomics and small molecule mass spectrometry software solutions for handling large-scale, data-rich, biological identification and quantitative experiments.


As a core lab, one of our missions is to educate and empower end users: Scaffold is ideal for this purpose. Scaffold presents results in an intuitive ... format and the free Scaffold viewer enables researchers to view and analyze their own data.

Allis Chien, Stanford University